IL_9Y4G_060

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_060 not in the Motif Atlas

Geometric match to IL_4V9K_064

Geometric discrepancy: 0.2539

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9Y4G|1|A5|A|1723
9Y4G|1|A5|G|1724
9Y4G|1|A5|U|1725
*
9Y4G|1|A5|A|1837
9Y4G|1|A5|A|1838
9Y4G|1|A5|U|1839

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain CF

60S ribosomal protein L7

Chain CT

60S ribosomal protein L21

Chain Cb

60S ribosomal protein L29