IL_9Y4G_064

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_064 not in the Motif Atlas

Homologous match to IL_9PN5_040

Geometric discrepancy: 0.1861

The information below is about IL_9PN5_040

Detailed Annotation

Tandem non-canonical cWW pairs; U in syn

Broad Annotation

Tandem non-canonical cWW pairs; U in syn

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9Y4G|1|A5|A|1746
9Y4G|1|A5|U|1747
9Y4G|1|A5|U|1748
9Y4G|1|A5|A|1749
*
9Y4G|1|A5|U|1781
9Y4G|1|A5|U|1782
9Y4G|1|A5|C|1783
9Y4G|1|A5|U|1784

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain CD

60S ribosomal protein L5

Chain CI

60S ribosomal protein L10-like