IL_9Y4G_089

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_089 not in the Motif Atlas

Homologous match to IL_8GLP_092

Geometric discrepancy: 0.5006

The information below is about IL_8GLP_092

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9Y4G|1|A6|A|2477
9Y4G|1|A6|C|2478
9Y4G|1|A6|G|2479
*
9Y4G|1|A6|C|2499
9Y4G|1|A6|U|2500

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CX

60S ribosomal protein L23a