IL_9Y4G_095

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_095 not in the Motif Atlas

Geometric match to IL_5T83_003

Geometric discrepancy: 0.2948

The information below is about IL_5T83_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9Y4G|1|A6|C|2651
9Y4G|1|A6|G|2652
9Y4G|1|A6|C|2653
*
9Y4G|1|A6|G|2681
9Y4G|1|A6|G|2682

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain Cg

60S ribosomal protein L34

Chain Cp

60S ribosomal protein L37a