IL_9Y4G_096
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9Y4G|1|A6|U|2661, 9Y4G|1|A6|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y4G_096 not in the Motif Atlas
- Homologous match to IL_8GLP_101
- Geometric discrepancy: 0.1334
- The information below is about IL_8GLP_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Y4G|1|A6|U|2656
9Y4G|1|A6|G|2657
9Y4G|1|A6|G|2658
9Y4G|1|A6|A|2659
9Y4G|1|A6|A|2660
9Y4G|1|A6|U|2661
9Y4G|1|A6|G|2662
*
9Y4G|1|A6|C|2672
9Y4G|1|A6|G|2673
9Y4G|1|A6|A|2674
9Y4G|1|A6|G|2675
9Y4G|1|A6|A|2676
9Y4G|1|A6|G|2677
9Y4G|1|A6|A|2678
Current chains
- Chain A6
- LSU-beta rRNA (2108-MER)
Nearby chains
- Chain AN
- 40S ribosomal protein S13
- Chain CR
- 60S ribosomal protein L19
- Chain CZ
- 60S ribosomal protein L27
- Chain Cg
- 60S ribosomal protein L34
- Chain Cp
- 60S ribosomal protein L37a
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