IL_9Y4G_153

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCC*GUC

Length

7 nucleotides

Bulged bases

9Y4G|1|A6|C|4771

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_153 not in the Motif Atlas

Geometric match to IL_3RG5_002

Geometric discrepancy: 0.3141

The information below is about IL_3RG5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9Y4G|1|A6|G|4769
9Y4G|1|A6|U|4770
9Y4G|1|A6|C|4771
9Y4G|1|A6|C|4772
*
9Y4G|1|A6|G|4863
9Y4G|1|A6|U|4864
9Y4G|1|A6|C|4865

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CH

60S ribosomal protein L9

Chain CO

60S ribosomal protein L13a