IL_9Y4G_175

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9Y4G|1|B2|A|45, 9Y4G|1|B2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_175 not in the Motif Atlas

Homologous match to IL_9H3G_158

Geometric discrepancy: 0.145

The information below is about IL_9H3G_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.4

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9Y4G|1|B2|G|41
9Y4G|1|B2|A|42
9Y4G|1|B2|U|43
9Y4G|1|B2|U|44
9Y4G|1|B2|A|45
9Y4G|1|B2|A|46
9Y4G|1|B2|G|47
*
9Y4G|1|B2|C|479
9Y4G|1|B2|G|480
9Y4G|1|B2|C|481

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AX

40S ribosomal protein S23