IL_9Y4G_220
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 9Y4G|1|B2|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y4G_220 not in the Motif Atlas
- Geometric match to IL_8GLP_240
- Geometric discrepancy: 0.1479
- The information below is about IL_8GLP_240
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9Y4G|1|B2|G|952
9Y4G|1|B2|C|953
9Y4G|1|B2|U|954
9Y4G|1|B2|A|955
9Y4G|1|B2|G|956
*
9Y4G|1|B2|C|967
9Y4G|1|B2|U|968
9Y4G|1|B2|U|969
9Y4G|1|B2|G|970
9Y4G|1|B2|G|971
9Y4G|1|B2|A|972
9Y4G|1|B2|C|973
9Y4G|1|B2|C|974
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain AB
- 40S ribosomal protein S3a
- Chain AO
- 40S ribosomal protein S14
- Chain CA
- 60S ribosomal protein L8
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