IL_9Y4G_222

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_222 not in the Motif Atlas

Homologous match to IL_9H3G_204

Geometric discrepancy: 0.1799

The information below is about IL_9H3G_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9Y4G|1|B2|C|1047
9Y4G|1|B2|G|1048
9Y4G|1|B2|A|1049
9Y4G|1|B2|A|1050
9Y4G|1|B2|G|1051
*
9Y4G|1|B2|C|1067
9Y4G|1|B2|G|1068
9Y4G|1|B2|U|1069
9Y4G|1|B2|A|1070
9Y4G|1|B2|G|1071

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain AO

40S ribosomal protein S14

Chain Aa

40S ribosomal protein S26

Chain CA

60S ribosomal protein L8

Chain Cn

60S ribosomal protein L41