IL_9Y4G_245

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9Y4G|1|B2|C|1403, 9Y4G|1|B2|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_245 not in the Motif Atlas

Homologous match to IL_9PN5_213

Geometric discrepancy: 0.2707

The information below is about IL_9PN5_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.4

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

4

Unit IDs

9Y4G|1|B2|A|1402
9Y4G|1|B2|C|1403
9Y4G|1|B2|U|1404
9Y4G|1|B2|A|1405
*
9Y4G|1|B2|U|1441
9Y4G|1|B2|U|1442
9Y4G|1|B2|C|1443
9Y4G|1|B2|U|1444

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S3

Chain AQ

40S ribosomal protein S16

Chain AU

40S ribosomal protein S20

Chain Ag

Guanine nucleotide-binding protein subunit beta-2-like 1