IL_9Y4G_265

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_265 not in the Motif Atlas

Geometric match to IL_8QYX_170

Geometric discrepancy: 0.1386

The information below is about IL_8QYX_170

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01334.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9Y4G|1|B2|C|1739
9Y4G|1|B2|C|1740
9Y4G|1|B2|U|1741
*
9Y4G|1|B2|A|1793
9Y4G|1|B2|C|1794
9Y4G|1|B2|G|1795

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain CW

60S ribosomal protein L24