IL_9Y79_020

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_020 not in the Motif Atlas

Geometric match to IL_8B0X_020

Geometric discrepancy: 0.137

The information below is about IL_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02111.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9Y79|1|D|C|440
9Y79|1|D|A|441
9Y79|1|D|G|442
*
9Y79|1|D|C|492
9Y79|1|D|A|493
9Y79|1|D|G|494
9Y79|1|D|A|495
9Y79|1|D|A|496
9Y79|1|D|G|497

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4