IL_9Y79_023

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_023 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.1608

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9Y79|1|D|C|504
9Y79|1|D|G|505
9Y79|1|D|G|506
9Y79|1|D|C|507
9Y79|1|D|U|508
9Y79|1|D|A|509
9Y79|1|D|A|510
9Y79|1|D|C|511
*
9Y79|1|D|G|540
9Y79|1|D|G|541

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 39 nt long spacer

Chain J

Small ribosomal subunit protein uS4

Chain R

30S ribosomal protein S12