IL_9Y79_028
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 9Y79|1|D|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y79_028 not in the Motif Atlas
- Homologous match to IL_6CZR_408
- Geometric discrepancy: 0.5681
- The information below is about IL_6CZR_408
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9Y79|1|D|U|605
9Y79|1|D|G|606
9Y79|1|D|A|607
9Y79|1|D|A|608
9Y79|1|D|A|609
9Y79|1|D|U|610
9Y79|1|D|C|611
9Y79|1|D|C|612
*
9Y79|1|D|G|628
9Y79|1|D|A|629
9Y79|1|D|A|630
9Y79|1|D|C|631
9Y79|1|D|U|632
9Y79|1|D|G|633
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain J
- Small ribosomal subunit protein uS4
- Chain N
- Small ribosomal subunit protein uS8
- Chain U
- Small ribosomal subunit protein bS16
- Chain V
- Small ribosomal subunit protein uS17
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