IL_9Y79_034
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y79_034 not in the Motif Atlas
- Homologous match to IL_6CZR_145
- Geometric discrepancy: 0.1351
- The information below is about IL_6CZR_145
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9Y79|1|D|C|779
9Y79|1|D|A|780
9Y79|1|D|A|781
9Y79|1|D|A|782
9Y79|1|D|C|783
*
9Y79|1|D|G|799
9Y79|1|D|G|800
9Y79|1|D|U|801
9Y79|1|D|A|802
9Y79|1|D|G|803
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein bS21
- Chain Q
- 30S ribosomal protein S11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: