IL_9Y79_038

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9Y79|1|D|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_038 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.2123

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9Y79|1|D|G|933
9Y79|1|D|C|934
9Y79|1|D|A|935
*
9Y79|1|D|U|1380
9Y79|1|D|U|1381
9Y79|1|D|C|1382
9Y79|1|D|C|1383
9Y79|1|D|C|1384

Current chains

Chain D

16S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain M

Small ribosomal subunit protein uS7

Chain O

Small ribosomal subunit protein uS9