IL_9Y79_046

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

9Y79|1|D|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_046 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.1824

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9Y79|1|D|U|1060
9Y79|1|D|G|1061
*
9Y79|1|D|C|1195
9Y79|1|D|A|1196
9Y79|1|D|A|1197

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 39 nt long spacer

Chain I

30S ribosomal protein S3

Chain K

Small ribosomal subunit protein uS5

Chain P

Small ribosomal subunit protein uS10

Chain S

Small ribosomal subunit protein uS14