IL_9Y79_047
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y79_047 not in the Motif Atlas
- Homologous match to IL_6CZR_157
- Geometric discrepancy: 0.1824
- The information below is about IL_6CZR_157
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_08069.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9Y79|1|D|G|1061
9Y79|1|D|U|1062
9Y79|1|D|C|1063
*
9Y79|1|D|G|1193
9Y79|1|D|U|1194
9Y79|1|D|C|1195
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 39 nt long spacer
- Chain I
- 30S ribosomal protein S3
- Chain K
- Small ribosomal subunit protein uS5
- Chain P
- Small ribosomal subunit protein uS10
- Chain S
- Small ribosomal subunit protein uS14
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