IL_9Y79_048

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9Y79|1|D|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_048 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.1904

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9Y79|1|D|G|1124
9Y79|1|D|U|1125
9Y79|1|D|U|1126
9Y79|1|D|G|1127
9Y79|1|D|C|1128
*
9Y79|1|D|G|1144
9Y79|1|D|A|1145
9Y79|1|D|A|1146
9Y79|1|D|C|1147
9Y79|1|D|U|1148
9Y79|1|D|C|1149

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS9

Chain P

Small ribosomal subunit protein uS10