IL_9Y79_081

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9Y79|1|a|G|776, 9Y79|1|a|A|788, 9Y79|1|a|A|789, 9Y79|1|a|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_081 not in the Motif Atlas

Geometric match to IL_9E6Q_032

Geometric discrepancy: 0.0551

The information below is about IL_9E6Q_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.3

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9Y79|1|a|G|775
9Y79|1|a|G|776
9Y79|1|a|G|777
*
9Y79|1|a|C|787
9Y79|1|a|A|788
9Y79|1|a|A|789
9Y79|1|a|U|790
9Y79|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34