IL_9Y79_098
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 9Y79|1|a|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y79_098 not in the Motif Atlas
- Homologous match to IL_7A0S_038
- Geometric discrepancy: 0.2833
- The information below is about IL_7A0S_038
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_76400.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9Y79|1|a|G|1031
9Y79|1|a|A|1032
9Y79|1|a|U|1033
9Y79|1|a|G|1034
*
9Y79|1|a|C|1121
9Y79|1|a|G|1122
9Y79|1|a|C|1123
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain q
- 50S ribosomal protein L36
- Chain v
- 50S ribosomal protein L16
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