IL_9Y79_105

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9Y79|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_105 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1891

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9Y79|1|a|C|1208
9Y79|1|a|U|1209
9Y79|1|a|G|1210
9Y79|1|a|C|1211
9Y79|1|a|G|1212
9Y79|1|a|A|1213
9Y79|1|a|A|1214
9Y79|1|a|G|1215
*
9Y79|1|a|U|1234
9Y79|1|a|G|1235
9Y79|1|a|G|1236
9Y79|1|a|A|1237
9Y79|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L20