IL_9Y79_132

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9Y79|1|a|A|1801, 9Y79|1|a|C|1816, 9Y79|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y79_132 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0981

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9Y79|1|a|U|1798
9Y79|1|a|G|1799
9Y79|1|a|C|1800
9Y79|1|a|A|1801
9Y79|1|a|A|1802
9Y79|1|a|A|1803
9Y79|1|a|C|1804
*
9Y79|1|a|G|1813
9Y79|1|a|G|1814
9Y79|1|a|A|1815
9Y79|1|a|C|1816
9Y79|1|a|G|1817
9Y79|1|a|U|1818
9Y79|1|a|A|1819
9Y79|1|a|U|1820
9Y79|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2