IL_9YDD_016
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9YDD|1|A|A|519, 9YDD|1|A|U|520
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_016 not in the Motif Atlas
- Homologous match to IL_9PN5_018
- Geometric discrepancy: 0.0704
- The information below is about IL_9PN5_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_40132.1
- Basepair signature
- cWW-tSH-tHS-tWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9YDD|1|A|G|517
9YDD|1|A|G|518
9YDD|1|A|A|519
9YDD|1|A|U|520
9YDD|1|A|A|521
9YDD|1|A|A|522
9YDD|1|A|A|523
9YDD|1|A|U|524
9YDD|1|A|C|525
*
9YDD|1|A|G|567
9YDD|1|A|G|568
9YDD|1|A|A|569
9YDD|1|A|A|570
9YDD|1|A|U|571
9YDD|1|A|A|572
9YDD|1|A|C|573
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LI
- 60S ribosomal protein L7-A
- Chain LO
- 60S ribosomal protein L14-A
- Chain LU
- 60S ribosomal protein L20-A
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