IL_9YDD_017

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

9YDD|1|A|U|534, 9YDD|1|A|U|558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_017 not in the Motif Atlas

Homologous match to IL_9SUM_018

Geometric discrepancy: 0.09

The information below is about IL_9SUM_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.3

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9YDD|1|A|G|531
9YDD|1|A|A|532
9YDD|1|A|A|533
9YDD|1|A|U|534
9YDD|1|A|G|535
9YDD|1|A|U|536
9YDD|1|A|A|537
9YDD|1|A|G|538
*
9YDD|1|A|U|553
9YDD|1|A|A|554
9YDD|1|A|U|555
9YDD|1|A|U|556
9YDD|1|A|A|557
9YDD|1|A|U|558
9YDD|1|A|A|559
9YDD|1|A|G|560
9YDD|1|A|C|561

Current chains

Chain A

25S RNA

Nearby chains

Chain LO

60S ribosomal protein L14-A

Chain LU

60S ribosomal protein L20-A