IL_9YDD_047
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 9YDD|1|A|U|1191, 9YDD|1|A|C|1192, 9YDD|1|A|C|1316, 9YDD|1|A|A|1318
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_047 not in the Motif Atlas
- Homologous match to IL_9PN5_049
- Geometric discrepancy: 0.0719
- The information below is about IL_9PN5_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.4
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9YDD|1|A|C|1187
9YDD|1|A|U|1188
9YDD|1|A|C|1189
9YDD|1|A|A|1190
9YDD|1|A|U|1191
9YDD|1|A|C|1192
9YDD|1|A|A|1193
9YDD|1|A|G|1194
*
9YDD|1|A|C|1314
9YDD|1|A|U|1315
9YDD|1|A|C|1316
9YDD|1|A|A|1317
9YDD|1|A|A|1318
9YDD|1|A|G|1319
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LK
- 60S ribosomal protein L9-A
- Chain LO
- 60S ribosomal protein L14-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LU
- 60S ribosomal protein L20-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
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