IL_9YDD_074
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 9YDD|1|A|U|1931
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_074 not in the Motif Atlas
- Homologous match to IL_9PN5_077
- Geometric discrepancy: 0.0593
- The information below is about IL_9PN5_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|C|1918
9YDD|1|A|G|1919
9YDD|1|A|U|1920
9YDD|1|A|A|1921
9YDD|1|A|A|1922
9YDD|1|A|C|1923
*
9YDD|1|A|G|1928
9YDD|1|A|G|1929
9YDD|1|A|A|1930
9YDD|1|A|U|1931
9YDD|1|A|A|1932
9YDD|1|A|A|1933
9YDD|1|A|G|1934
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain Lp
- 60S ribosomal protein L41-A
- Chain Lr
- 60S ribosomal protein L43-A
Coloring options: