IL_9YDD_130
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_130 not in the Motif Atlas
- Homologous match to IL_9PN5_134
- Geometric discrepancy: 0.1026
- The information below is about IL_9PN5_134
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.3
- Basepair signature
- cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9YDD|1|B|G|21
9YDD|1|B|A|22
9YDD|1|B|A|23
9YDD|1|B|A|24
9YDD|1|B|G|25
9YDD|1|B|C|26
9YDD|1|B|A|27
*
9YDD|1|B|U|53
9YDD|1|B|U|54
9YDD|1|B|A|55
9YDD|1|B|A|56
9YDD|1|B|G|57
9YDD|1|B|C|58
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- Large ribosomal subunit protein uL5B
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