IL_9YDD_141
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|E|U|45, 9YDD|1|E|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_141 not in the Motif Atlas
- Geometric match to IL_8GLP_191
- Geometric discrepancy: 0.059
- The information below is about IL_8GLP_191
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88082.5
- Basepair signature
- cWW-L-tSS-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9YDD|1|E|G|42
9YDD|1|E|A|43
9YDD|1|E|U|44
9YDD|1|E|U|45
9YDD|1|E|A|46
9YDD|1|E|A|47
9YDD|1|E|G|48
*
9YDD|1|E|C|431
9YDD|1|E|G|432
9YDD|1|E|C|433
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain Sc
- 40S ribosomal protein S23-A
Coloring options: