IL_9YDD_150

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

9YDD|1|E|U|260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_150 not in the Motif Atlas

Geometric match to IL_8CRE_403

Geometric discrepancy: 0.2358

The information below is about IL_8CRE_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9YDD|1|E|G|204
9YDD|1|E|U|205
9YDD|1|E|A|206
*
9YDD|1|E|U|259
9YDD|1|E|U|260
9YDD|1|E|U|261
9YDD|1|E|U|262
9YDD|1|E|C|263

Current chains

Chain E

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SV

40S ribosomal protein S8-A