IL_9YDD_210
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_210 not in the Motif Atlas
- Homologous match to IL_9SUM_212
- Geometric discrepancy: 0.1313
- The information below is about IL_9SUM_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74283.2
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9YDD|1|E|G|1480
9YDD|1|E|C|1481
9YDD|1|E|C|1482
9YDD|1|E|A|1483
9YDD|1|E|G|1484
9YDD|1|E|C|1485
9YDD|1|E|G|1486
9YDD|1|E|A|1487
*
9YDD|1|E|U|1519
9YDD|1|E|U|1520
9YDD|1|E|G|1521
9YDD|1|E|U|1522
9YDD|1|E|G|1523
9YDD|1|E|A|1524
9YDD|1|E|A|1525
9YDD|1|E|A|1526
9YDD|1|E|C|1527
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain SB
- 40S ribosomal protein S5
- Chain SF
- 40S ribosomal protein S16-A
- Chain SI
- 40S ribosomal protein S19-A
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
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