IL_9YPG_016

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

9YPG|1|5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPG_016 not in the Motif Atlas

Homologous match to IL_8GLP_017

Geometric discrepancy: 0.096

The information below is about IL_8GLP_017

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9YPG|1|5|C|339
9YPG|1|5|C|340
9YPG|1|5|G|341
9YPG|1|5|G|342
*
9YPG|1|8|C|32
9YPG|1|8|G|33

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37