IL_9YPG_121

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9YPG|1|5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPG_121 not in the Motif Atlas

Homologous match to IL_8GLP_131

Geometric discrepancy: 0.0554

The information below is about IL_8GLP_131

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9YPG|1|5|G|3916
9YPG|1|5|A|3917
*
9YPG|1|5|U|4384
9YPG|1|5|A|4385
9YPG|1|5|C|4386
9YPG|1|5|C|4387

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain A

Ribosomal protein L8