IL_9YPG_134

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

9YPG|1|5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPG_134 not in the Motif Atlas

Homologous match to IL_8GLP_141

Geometric discrepancy: 0.165

The information below is about IL_8GLP_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9YPG|1|5|G|4347
9YPG|1|5|A|4348
9YPG|1|5|C|4349
9YPG|1|5|C|4350
*
9YPG|1|5|G|4364
9YPG|1|5|C|4365

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain Q

Ribosomal protein L18

Chain a

60S ribosomal protein L27a

Chain o

Large ribosomal subunit protein eL42