IL_9YPT_038
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 9YPT|1|5|G|748, 9YPT|1|5|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPT_038 not in the Motif Atlas
- Geometric match to IL_8GLP_040
- Geometric discrepancy: 0.1088
- The information below is about IL_8GLP_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25001.3
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9YPT|1|5|G|745
9YPT|1|5|A|746
9YPT|1|5|A|747
9YPT|1|5|G|748
9YPT|1|5|G|749
9YPT|1|5|U|750
9YPT|1|5|G|751
9YPT|1|5|G|752
*
9YPT|1|5|U|911
9YPT|1|5|G|912
9YPT|1|5|U|913
9YPT|1|5|U|914
9YPT|1|5|A|915
9YPT|1|5|C|916
9YPT|1|5|A|917
9YPT|1|5|G|918
9YPT|1|5|C|919
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L14
- Chain S
- 60S ribosomal protein L18a
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