IL_9YPV_120
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GA*UACC
- Length
- 6 nucleotides
- Bulged bases
- 9YPV|1|5|A|4385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPV_120 not in the Motif Atlas
- Homologous match to IL_8GLP_131
- Geometric discrepancy: 0.0539
- The information below is about IL_8GLP_131
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_98469.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 37
Unit IDs
9YPV|1|5|G|3916
9YPV|1|5|A|3917
*
9YPV|1|5|U|4384
9YPV|1|5|A|4385
9YPV|1|5|C|4386
9YPV|1|5|C|4387
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 13
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
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