IL_9YPV_239
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 9YPV|1|9|G|1285, 9YPV|1|9|U|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|9|G|1281
9YPV|1|9|A|1282
9YPV|1|9|C|1283
9YPV|1|9|A|1284
9YPV|1|9|G|1285
9YPV|1|9|G|1286
9YPV|1|9|A|1287
9YPV|1|9|U|1288
9YPV|1|9|U|1289
9YPV|1|9|G|1290
*
9YPV|1|9|C|1309
9YPV|1|9|U|1310
9YPV|1|9|C|1311
9YPV|1|9|G|1312
9YPV|1|9|A|1313
9YPV|1|9|U|1314
9YPV|1|9|U|1315
9YPV|1|9|C|1316
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain KK
- Small ribosomal subunit protein eS10
- Chain MM
- 40S ribosomal protein S12
- Chain dd
- eS29
- Chain ff
- Ribosomal protein S27a
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