IL_9YPZ_037

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9YPZ|1|5|G|748, 9YPZ|1|5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|G|745
9YPZ|1|5|A|746
9YPZ|1|5|A|747
9YPZ|1|5|G|748
9YPZ|1|5|G|749
9YPZ|1|5|U|750
9YPZ|1|5|G|751
9YPZ|1|5|G|752
*
9YPZ|1|5|U|911
9YPZ|1|5|G|912
9YPZ|1|5|U|913
9YPZ|1|5|U|914
9YPZ|1|5|A|915
9YPZ|1|5|C|916
9YPZ|1|5|A|917
9YPZ|1|5|G|918
9YPZ|1|5|C|919

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a