IL_9YPZ_106
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 9YPZ|1|5|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPZ_106 not in the Motif Atlas
- Homologous match to IL_8GLP_108
- Geometric discrepancy: 0.0475
- The information below is about IL_8GLP_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YPZ|1|5|C|2867
9YPZ|1|5|G|2868
9YPZ|1|5|U|2869
9YPZ|1|5|A|2870
9YPZ|1|5|A|2871
9YPZ|1|5|C|2872
*
9YPZ|1|5|G|2877
9YPZ|1|5|G|2878
9YPZ|1|5|A|2879
9YPZ|1|5|U|2880
9YPZ|1|5|A|2881
9YPZ|1|5|A|2882
9YPZ|1|5|G|2883
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eL41
- Chain p
- eL43
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