IL_9YQ1_107

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9YQ1|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|C|2867
9YQ1|1|5|G|2868
9YQ1|1|5|U|2869
9YQ1|1|5|A|2870
9YQ1|1|5|A|2871
9YQ1|1|5|C|2872
*
9YQ1|1|5|G|2877
9YQ1|1|5|G|2878
9YQ1|1|5|A|2879
9YQ1|1|5|U|2880
9YQ1|1|5|A|2881
9YQ1|1|5|A|2882
9YQ1|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43