J3_10PX_017
3D structure
- PDB id
- 10PX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 10PX|1|1A|A|2518, 10PX|1|1A|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_10PX_017 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.0878
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
10PX|1|1A|C|2517
10PX|1|1A|A|2518
10PX|1|1A|U|2519
10PX|1|1A|C|2520
*
10PX|1|1A|G|2545
10PX|1|1A|U|2546
10PX|1|1A|U|2547
*
10PX|1|1A|A|2561
10PX|1|1A|U|2562
10PX|1|1A|U|2563
10PX|1|1A|A|2564
10PX|1|1A|A|2565
10PX|1|1A|A|2566
10PX|1|1A|G|2567
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1N
- 50S ribosomal protein L13
- Chain 1O
- 50S ribosomal protein L14
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