J3_10PX_026
3D structure
- PDB id
- 10PX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 10PX|1|1a|U|871, 10PX|1|1a|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_10PX_026 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.124
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
10PX|1|1a|C|826
10PX|1|1a|U|827
10PX|1|1a|A|828
10PX|1|1a|G|829
*
10PX|1|1a|C|857
10PX|1|1a|G|858
10PX|1|1a|A|859
10PX|1|1a|A|860
10PX|1|1a|G|861
*
10PX|1|1a|C|868
10PX|1|1a|G|869
10PX|1|1a|U|870
10PX|1|1a|U|871
10PX|1|1a|A|872
10PX|1|1a|A|873
10PX|1|1a|G|874
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1h
- 30S ribosomal protein S8
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