J3_10PX_053

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

10PX|1|2A|A|2518, 10PX|1|2A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10PX_053 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.0851

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

10PX|1|2A|C|2517
10PX|1|2A|A|2518
10PX|1|2A|U|2519
10PX|1|2A|C|2520
*
10PX|1|2A|G|2545
10PX|1|2A|U|2546
10PX|1|2A|U|2547
*
10PX|1|2A|A|2561
10PX|1|2A|U|2562
10PX|1|2A|U|2563
10PX|1|2A|A|2564
10PX|1|2A|A|2565
10PX|1|2A|A|2566
10PX|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14