J3_10PX_068

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

10PX|1|2a|U|1065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10PX_068 not in the Motif Atlas

Homologous match to J3_6CZR_023

Geometric discrepancy: 0.1758

The information below is about J3_6CZR_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.2

Basepair signature

cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

10PX|1|2a|C|1063
10PX|1|2a|G|1064
10PX|1|2a|U|1065
10PX|1|2a|C|1066
10PX|1|2a|A|1067
10PX|1|2a|G|1068
*
10PX|1|2a|C|1107
10PX|1|2a|G|1108
10PX|1|2a|C|1109
10PX|1|2a|A|1110
10PX|1|2a|A|1111
10PX|1|2a|C|1112
10PX|1|2a|C|1113
*
10PX|1|2a|G|1187
10PX|1|2a|A|1188
10PX|1|2a|C|1189
10PX|1|2a|G|1190
10PX|1|2a|A|1191
10PX|1|2a|C|1192
10PX|1|2a|G|1193

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2e

30S ribosomal protein S5

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z