Motif J3_08394.2 Version J3_08394.2 of this group appears in releases 3.18 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12		13	break		14		15		16		17		18		19		20	1-20	2-17	4-18	6-7	6-18	7-18	13-14
1	J3_5J7L_008	5J7L	0.1134	AA	SSU rRNA	C	1063	G	1064	U	1065	C	1066	A	1067	G	1068	*	C	1107	G	1108	C	1109	A	1110	A	1111	C	1112	C	1113	*	G	1187	A	1188	U	1189	G	1190	A	1191	C	1192	G	1193	cWW	tSS	tWH	cWW			cWW
2	J3_4LFB_007	4LFB	0.0000	A	SSU rRNA	C	1063	G	1064	U	1065	C	1066	A	1067	G	1068	*	C	1107	G	1108	C	1109	A	1110	A	1111	C	1112	C	1113	*	G	1187	A	1188	C	1189	G	1190	A	1191	C	1192	G	1193	cWW	ntSS	tWH	cWW			cWW
3	J3_6CZR_023	6CZR	0.1188	1a	SSU rRNA	C	1046	G	1047	U	1048	C	1049	A	1050	G	1051	*	C	1090	G	1091	C	1092	A	1093	A	1094	C	1095	C	1096	*	G	1169	A	1170	C	1171	G	1172	A	1173	C	1174	G	1175	cWW	ntSS		cWW	ntsS	ncsS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUCAGCGCAACCGACGACG	2
CGUCAGCGCAACCGAUGACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUCAGCAACACGAC	2
GUCAGCAACAUGAC	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87	3.88	3.89	3.90	3.91	3.92	3.93	3.94	3.95
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14	2024-09-11	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
Heat map statistics: Min 0.11 | Avg 0.08 | Max 0.15

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Coloring options: Nucleotide numbers

Motif J3_08394.2 Version J3_08394.2 of this group appears in releases 3.18 to 3.95 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif J3_08394.2 Version J3_08394.2 of this group appears in releases 3.18 to 3.95

Download

Csv

Json