J3_10QM_011

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

10QM|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10QM_011 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1127

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

10QM|1|I|C|1306
10QM|1|I|A|1307
10QM|1|I|A|1308
10QM|1|I|G|1309
*
10QM|1|I|C|1605
10QM|1|I|C|1606
10QM|1|I|C|1607
10QM|1|I|A|1608
10QM|1|I|A|1609
10QM|1|I|A|1610
10QM|1|I|C|1611
*
10QM|1|I|G|1620
10QM|1|I|U|1621
10QM|1|I|G|1622

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L34