J3_10QM_017
3D structure
- PDB id
- 10QM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli 50S ribosomal subunit bound to compound 48a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 10QM|1|I|A|2518, 10QM|1|I|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_10QM_017 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.1954
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
10QM|1|I|C|2517
10QM|1|I|A|2518
10QM|1|I|U|2519
10QM|1|I|C|2520
*
10QM|1|I|G|2545
10QM|1|I|U|2546
10QM|1|I|A|2547
*
10QM|1|I|U|2561
10QM|1|I|U|2562
10QM|1|I|U|2563
10QM|1|I|A|2564
10QM|1|I|A|2565
10QM|1|I|A|2566
10QM|1|I|G|2567
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain R
- Large ribosomal subunit protein uL13
- Chain S
- Large ribosomal subunit protein uL14
- Chain m
- 50S ribosomal protein L36
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