J3_11BQ_025

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

11BQ|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11BQ_025 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.122

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

11BQ|1|a|C|1306
11BQ|1|a|A|1307
11BQ|1|a|A|1308
11BQ|1|a|G|1309
*
11BQ|1|a|C|1605
11BQ|1|a|C|1606
11BQ|1|a|C|1607
11BQ|1|a|A|1608
11BQ|1|a|A|1609
11BQ|1|a|A|1610
11BQ|1|a|C|1611
*
11BQ|1|a|G|1620
11BQ|1|a|U|1621
11BQ|1|a|G|1622

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34