J3_11BQ_028

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

11BQ|1|a|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11BQ_028 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.2061

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

11BQ|1|a|C|2091
11BQ|1|a|U|2092
11BQ|1|a|G|2093
*
11BQ|1|a|C|2196
11BQ|1|a|U|2197
11BQ|1|a|A|2198
11BQ|1|a|A|2199
11BQ|1|a|C|2200
*
11BQ|1|a|G|2223
11BQ|1|a|G|2224
11BQ|1|a|A|2225
11BQ|1|a|C|2226
11BQ|1|a|A|2227
11BQ|1|a|G|2228

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28