J3_11DG_005

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

11DG|1|A|U|871, 11DG|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11DG_005 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.2423

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

11DG|1|A|C|826
11DG|1|A|U|827
11DG|1|A|U|828
11DG|1|A|G|829
*
11DG|1|A|C|857
11DG|1|A|G|858
11DG|1|A|G|859
11DG|1|A|A|860
11DG|1|A|G|861
*
11DG|1|A|C|868
11DG|1|A|G|869
11DG|1|A|U|870
11DG|1|A|U|871
11DG|1|A|A|872
11DG|1|A|A|873
11DG|1|A|G|874

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain H

Small ribosomal subunit protein uS8

Chain U

Small ribosomal subunit protein bS21